Learn R Programming

phytools (version 0.2-40)

reorderSimmap: Reorder edges of a simmap tree

Description

Function returns a reordered modified "phylo" object by using reorder.phylo but then sorting the additional elements $mapped.edge and $maps to have the same order as $edge.

Usage

reorderSimmap(tree, order="cladewise")

Arguments

tree
a modified object of class "phylo".
order
either "cladewise" or "pruningwise" (see reorder.phylo).

Value

  • a modified "phylo" object.

See Also

reorder.phylo, plotSimmap