Usage
dotTree(tree, x, legend=TRUE, method="plotTree", standardize=FALSE, ...)
dot.legend(x, y, min, max, Ntip, length=5, prompt=FALSE, method="plotTree", ...)
Arguments
tree
an object of class "phylo".
x
vector of trait values; or a matrix. In the case of dot.legend, the x coordinate of the legend.
legend
logical value indicating whether or not a legend should be plotted.
method
tree plotting method to be used internally. Will switch to method="phylogram" if the number of traits is greater than one. For dot.legend, it should be the method that was used for the plot.
standardize
a logical value indicating whether or not to standardize x, or each column of x, to have a mean of zero & variance of one prior to analysis.
y
y coordinate of the legend.
min
minimum value for dot.legend.
max
maximum value for dot.legend.
Ntip
number of tips in the plotted tree for dot.legend.
prompt
logical value indicating whether or not to prompt for legend position.
...
optional arguments. In the case of dotTree, these will be passed to plotTree or a different internally used plotting function for method="phylogram". See