phylocom

Phylogeny, community and trait data from the Phylocom 4.0 distribution

datasets

Functions for phylocom integration, community analyses, null-models, traits and evolution. Implements numerous ecophylogenetic approaches including measures of community phylogenetic and trait diversity, phylogenetic signal, estimation of trait values for unobserved taxa, null models for community and phylogeny randomizations, and utility functions for data input/output and phylogeny plotting. A full description of package functionality and methods are provided by Kembel et al. (2010) <doi:10.1093/bioinformatics/btq166>.

Steven W Kembel

picante

Integrating Phylogenies and Ecology

Helene Morlon

phylocom function

A list with three elements:<dl>
 <dt> phylo </dt>
<dd>Phylogenetic tree (an object of class phylo)</dd> <dt> sample </dt>
<dd>Community data (a data.frame with samples in rows and species in columns</dd> <dt> traits </dt>
<dd>Trait data (a data.frame with species in rows and traits in columns</dd> 
</dl>

Format

Phylocom default data — phylocom

A list with three elements:<dl>
 <dt> phylo </dt>
<dd>Phylogenetic tree (an object of class phylo)</dd>

 <dt> sample </dt>
<dd>Community data (a data.frame with samples in rows and species in columns</dd>

 <dt> traits </dt>
<dd>Trait data (a data.frame with species in rows and traits in columns</dd>

 
</dl>

phylocom: Phylocom default data

Description

Usage

Arguments

Format