readsample

Reads a Phylocom sample file and converts to a community data matrix

Functions for phylocom integration, community analyses, null-models, traits and evolution. Implements numerous ecophylogenetic approaches including measures of community phylogenetic and trait diversity, phylogenetic signal, estimation of trait values for unobserved taxa, null models for community and phylogeny randomizations, and utility functions for data input/output and phylogeny plotting. A full description of package functionality and methods are provided by Kembel et al. (2010) <doi:10.1093/bioinformatics/btq166>.

Steven W Kembel

picante

Integrating Phylogenies and Ecology

Helene Morlon

readsample function

<dl> <dt>filename</dt>
<dd>Phylocom sample file path</dd></dl>

Arguments

Steven Kembel &lt;skembel&gt; and Cam Webb &lt;cwebb@oeb.harvard.edu&gt;

Author

Read Phylocom sample — readsample

<dl>

 <dt>filename</dt>
<dd>Phylocom sample file path</dd>

</dl>

readsample: Read Phylocom sample

Description

Usage

Value

Arguments

Author

References