piglet (version 1.0.7)

extractASCTable: Extracts the allele cluster table from the archive file.

Description

Extracts the allele cluster table from the archive file.

Usage

extractASCTable(archive_file = NULL)

Value

Returns the allele cluster table.

The table columns: new_allele - the ASC given allele name func_group - the ASC cluster number imgt_allele - the original IUIS/IMGT allele name thresh - the allele threshold for ASC-based genotype inference amplicon_length - is the original length of the reference set.

Arguments

archive_file

A path to the asc archive file. Default is null. (see details)

Details

For downloading the latest archive file with the updated allele cluster table, use the function recentAlleleClusters.

Examples

# \donttest{
asc_archive <- recentAlleleClusters(doi="10.5281/zenodo.7429773", get_file = TRUE)

allele_cluster_table <- extractASCTable(archive_file = asc_archive)
# }