.create_iuis_labels_with_markers

Internal function to create IUIS labels with superscript markers
when multiple ASC groups split a single IUIS subgroup.

internal

Improves genotype inference and downstream Adaptive Immune Receptor Repertoire Sequence data analysis. Inference of allele similarity clusters, an alternative naming scheme and genotype inference for immunoglobulin heavy chain repertoires.
The main tools are allele similarity clusters, and allele based genotype. The first tool is designed to reduce the ambiguity within the immunoglobulin heavy chain V alleles. The ambiguity is caused by duplicated or similar alleles which are shared among different genes.
The second tool is an allele based genotype, that determined the presence of an allele based on a threshold derived from a naive population. See Peres et al. (2023) <doi:10.1093/nar/gkad603>.

Ayelet Peres

piglet

Program for Inferring Immunoglobulin Allele Similarity Clusters
and Genotypes

William Lees

Gur Yaari

.create_iuis_labels_with_markers function

<dl><dt>iuis_subgroups</dt>
<dd>Vector of IUIS subgroup names</dd>
<dt>asc_subgroups</dt>
<dd>Vector of corresponding ASC subgroup names</dd></dl>

Arguments

Create IUIS labels with markers for split groups — .create_iuis_labels_with_markers

<dl>

<dt>iuis_subgroups</dt>
<dd>Vector of IUIS subgroup names</dd>


<dt>asc_subgroups</dt>
<dd>Vector of corresponding ASC subgroup names</dd>

</dl>

.create_iuis_labels_with_markers: Create IUIS labels with markers for split groups

Description

Usage

Value

Arguments