check_reconstructed_phylogeny

Will <a href="/link/stop?package=pirouette&version=1.6.9" data-mini-rdoc="pirouette::stop">stop</a> if there are extinct species in the phylogeny

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

check_reconstructed_phylogeny function

<dl><dt>phylogeny</dt>
<dd>a phylogeny of class phylo</dd></dl>

Arguments

Author

Will <a href='https://rdrr.io/r/base/stop.html'>stop</a> if there are extinct species in the phylogeny

Check if the phylogeny is a reconstructed phylogeny. — check_reconstructed_phylogeny

<dl>

<dt>phylogeny</dt>
<dd>a phylogeny of class phylo</dd>

</dl>

check_reconstructed_phylogeny: Check if the phylogeny is a reconstructed phylogeny.

Description

Usage

Value

Arguments

Author