check_root_sequence

Will <a href="/link/stop?package=pirouette&version=1.6.9" data-mini-rdoc="pirouette::stop">stop</a> if not

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

check_root_sequence function

<dl><dt>root_sequence</dt>
<dd>the DNA sequence at the root of the phylogeny.
By default, this will consist out of an equal amount of each letter
Use check_root_sequence to check if a root sequence is valid.</dd></dl>

Arguments

Author

Will <a href='https://rdrr.io/r/base/stop.html'>stop</a> if not

Check if the root sequence is valid — check_root_sequence

<dl>

<dt>root_sequence</dt>
<dd>the DNA sequence at the root of the phylogeny.
By default, this will consist out of an equal amount of each letter
Use check_root_sequence to check if a root sequence is valid.</dd>

</dl>

check_root_sequence: Check if the root sequence is valid

Description

Usage

Value

Arguments

Author