check_sim_twin_tree_fun

Will <a href="/link/stop?package=pirouette&version=1.6.9" data-mini-rdoc="pirouette::stop">stop</a> if not

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

check_sim_twin_tree_fun function

<dl><dt>sim_twin_tree_fun</dt>
<dd>function to simulate a twin tree with.
This function must have one argument called <code>phylogeny</code>
of type phylo and have a return type of type phylo
as well.
Some standard functions: <ul>
<li>Use create_sim_yule_twin_tree_fun to use a
 Yule (aka Pure Birth) process</li>
<li>Use create_copy_twtr_from_true_fun to for a function
 that copies the true tree</li>
<li>Use get_sim_bd_twin_tree_fun to use a
 Birth-Death process</li>
</ul></dd></dl>

Arguments

Author

Will <a href='https://rdrr.io/r/base/stop.html'>stop</a> if not

Check if the sim_twin_tree_fun is valid — check_sim_twin_tree_fun

<dl>

<dt>sim_twin_tree_fun</dt>
<dd>function to simulate a twin tree with.
This function must have one argument called <code>phylogeny</code>
of type phylo and have a return type of type phylo
as well.
Some standard functions: <ul>
<li>Use create_sim_yule_twin_tree_fun to use a
 Yule (aka Pure Birth) process</li>
<li>Use create_copy_twtr_from_true_fun to for a function
 that copies the true tree</li>
<li>Use get_sim_bd_twin_tree_fun to use a
 Birth-Death process</li>
</ul></dd>

</dl>

check_sim_twin_tree_fun: Check if the `sim_twin_tree_fun` is valid

Description

Usage

Value

Arguments

Author

See Also