create_exemplary_dd_tree_giappo

Or: create a DD tree with a strong DD effect.

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

create_exemplary_dd_tree_giappo function

<dl><dt>n_taxa</dt>
<dd>number of tree tips</dd>
<dt>crown_age</dt>
<dd>the fixed crown age of the posterior. Set to NA
to let it be estimated</dd>
<dt>extinction_rate</dt>
<dd>per-species extinction rate</dd>
<dt>best_of_n_trees</dt>
<dd>simulate this number of DD trees with
the desired number of taxa,</dd></dl>

Arguments

Giovanni Laudanno, Richèl J.C. Bilderbeek

Author

Create an exemplary diversity-dependent (DD) birth-death tree. — create_exemplary_dd_tree_giappo

<dl>

<dt>n_taxa</dt>
<dd>number of tree tips</dd>


<dt>crown_age</dt>
<dd>the fixed crown age of the posterior. Set to NA
to let it be estimated</dd>


<dt>extinction_rate</dt>
<dd>per-species extinction rate</dd>


<dt>best_of_n_trees</dt>
<dd>simulate this number of DD trees with
the desired number of taxa,</dd>

</dl>

create_exemplary_dd_tree_giappo: Create an exemplary diversity-dependent (DD) birth-death tree.

Description

Usage

Value

Arguments

Author

Details

Examples