create_test_marg_liks

Create a testing marginal likelihoods data frame.

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

create_test_marg_liks function

<dl><dt>site_models</dt>
<dd>a list of one or more site models,
as created by create_site_model</dd>
<dt>clock_models</dt>
<dd>a list of one or more clock models,
as created by create_clock_model</dd>
<dt>tree_priors</dt>
<dd>a list of one or more tree priors,
as created by create_tree_prior</dd></dl>

Arguments

Author

Create a testing marginal likelihoods data frame. — create_test_marg_liks

<dl>

<dt>site_models</dt>
<dd>a list of one or more site models,
as created by create_site_model</dd>


<dt>clock_models</dt>
<dd>a list of one or more clock models,
as created by create_clock_model</dd>


<dt>tree_priors</dt>
<dd>a list of one or more tree priors,
as created by create_tree_prior</dd>

</dl>

create_test_marg_liks: Create a testing marginal likelihoods data frame.

Description

Usage

Value

Arguments

Author

Examples