create_twin_tree

It sets the seed with value <code>twinning_params$rng_seed_twin_tree</code>,
then generates a tree by
calling <code>twinning_paramssim_twin_tree_fun</code> on the
given tree.

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

create_twin_tree function

<dl><dt>phylogeny</dt>
<dd>a phylogeny of class phylo</dd>
<dt>twinning_params</dt>
<dd>can be <code>NA</code> if no twinning is desired,
or can be the twinning parameters,
as can be created by create_twinning_params</dd></dl>

Arguments

Richèl J.C. Bilderbeek, Giovanni Laudanno

Author

Create a twin tree — create_twin_tree

<dl>

<dt>phylogeny</dt>
<dd>a phylogeny of class phylo</dd>


<dt>twinning_params</dt>
<dd>can be <code>NA</code> if no twinning is desired,
or can be the twinning parameters,
as can be created by create_twinning_params</dd>

</dl>

create_twin_tree: Create a twin tree

Description

Usage

Value

Arguments

Author

Examples