get_test_alignment

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

get_test_alignment function

<dl><dt>n_taxa</dt>
<dd>number of tree tips</dd>
<dt>sequence_length</dt>
<dd>the length of each DNA sequence in an alignment</dd></dl>

Arguments

Get an alignment for testing. — get_test_alignment

<dl>

<dt>n_taxa</dt>
<dd>number of tree tips</dd>


<dt>sequence_length</dt>
<dd>the length of each DNA sequence in an alignment</dd>

</dl>

get_test_alignment: Get an alignment for testing.

Description

Usage

Value

Arguments

Examples