init_experiment

A normal user should never need to call this function.

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

init_experiment function

<dl><dt>experiment</dt>
<dd>a pirouette experiment,
as can be created by create_experiment</dd>
<dt>alignment_params</dt>
<dd>parameters to simulate an alignment,
as can be created by create_alignment_params</dd></dl>

Arguments

Initialize the experiment. — init_experiment

<dl>

<dt>experiment</dt>
<dd>a pirouette experiment,
as can be created by create_experiment</dd>


<dt>alignment_params</dt>
<dd>parameters to simulate an alignment,
as can be created by create_alignment_params</dd>

</dl>

init_experiment: Initialize the `experiment`.

Description

Usage

Value

Arguments

Details