pir_plot_from_long

Plot the error 'BEAST2' makes from a known phylogeny
from tidy data

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

pir_plot_from_long function

<dl><dt>tree_and_model_errors</dt>
<dd>a tibble of a <code>tree_and_model</code>
and errors, which passes check_tree_and_model_errors</dd>
<dt>tree_and_model_descriptions</dt>
<dd>tabular data that maps
a <code>tree_and_model</code> (e.g. <code>generative_true</code>) to
a description (e.g. "Generative, true"),
as created by get_tree_and_model_descriptions</dd></dl>

Arguments

Richèl J.C. Bilderbeek, Giovanni Laudanno

Author

Plot the error 'BEAST2' makes from a known phylogeny
from tidy data — pir_plot_from_long

<dl>

<dt>tree_and_model_errors</dt>
<dd>a tibble of a <code>tree_and_model</code>
and errors, which passes check_tree_and_model_errors</dd>


<dt>tree_and_model_descriptions</dt>
<dd>tabular data that maps
a <code>tree_and_model</code> (e.g. <code>generative_true</code>) to
a description (e.g. "Generative, true"),
as created by get_tree_and_model_descriptions</dd>

</dl>

pir_plot_from_long: Plot the error 'BEAST2' makes from a known phylogeny from tidy data

Description

Usage

Value

Arguments

Author