pir_run_distribution

This is a simple convenience functions: supply a phylogeny generator
function and one or more pirouette parameter sets.
For each parameters pair, pir_run is called with a phylogeny
drawn from the phylogeny generator function.

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

pir_run_distribution function

<dl><dt>sim_phylo_fun</dt>
<dd>function that, each time when called,
simulates one random tree.</dd>
<dt>pir_paramses</dt>
<dd>a list of pirouette parameters,
each element created by create_pir_params.</dd></dl>

Arguments

Do multiple pirouette runs off a distribition of phylogenies — pir_run_distribution

<dl>

<dt>sim_phylo_fun</dt>
<dd>function that, each time when called,
simulates one random tree.</dd>


<dt>pir_paramses</dt>
<dd>a list of pirouette parameters,
each element created by create_pir_params.</dd>

</dl>

pir_run_distribution: Do multiple pirouette runs off a distribition of phylogenies

Description

Usage

Value

Arguments