pir_save

Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.

Richel Bilderbeek

pirouette

Create a Bayesian Posterior from a Phylogeny

Richèl J.C. Bilderbeek

Giovanni Laudanno

Thijs Janzen

pir_save function

<dl><dt>phylogeny</dt>
<dd>a phylogeny of class phylo</dd>
<dt>pir_params</dt>
<dd>the parameters of pirouette.
They are created by create_pir_params.</dd>
<dt>pir_out</dt>
<dd>the output of pir_run</dd>
<dt>folder_name</dt>
<dd>name of the main folder</dd></dl>

Arguments

Save all output from pir_run — pir_save

<dl>

<dt>phylogeny</dt>
<dd>a phylogeny of class phylo</dd>


<dt>pir_params</dt>
<dd>the parameters of pirouette.
They are created by create_pir_params.</dd>


<dt>pir_out</dt>
<dd>the output of pir_run</dd>


<dt>folder_name</dt>
<dd>name of the main folder</dd>

</dl>

pir_save: Save all output from pir_run

Description

Usage

Value

Arguments