pirouette (version 1.6.9)

pir_to_tables: Create all tables to checks pirouette pipeline

Description

Create all tables to checks pirouette pipeline

Usage

pir_to_tables(pir_params, folder = tempdir())

Value

the names of all files created

Arguments

pir_params

the parameters of pirouette. They are created by create_pir_params.

folder

folder where the files are stored in. By default, this is a temporary folder

Author

Richèl J.C. Bilderbeek

Examples

if (beautier::is_on_ci() && beastier::is_beast2_installed()) {
  pir_params <- init_pir_params(create_test_pir_params())

  # Run only the true tree part
  pir_run_true_tree(
    true_phylogeny = ape::rcoal(4),
    pir_params = pir_params
  )
}