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plateCore (version 1.30.0)
Statistical tools and data structures for plate-based flow cytometry
Description
Provides basic S4 data structures and routines for analyzing plate based flow cytometry data.
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Version
1.30.0
1.28.0
1.26.0
1.24.0
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Version
1.30.0
License
Artistic-2.0
Maintainer
Errol Strain
Last Published
April 12th, 2010
Functions in plateCore (1.30.0)
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getGroups
Retrieve Negative control groups from a flowPlate
wellAnnotation
Retrieve a data.frame describing the content of a flowPlate
xyplot
Scatter plots (dotplots) for flowPlates.
compensate
Compensate a flowPlate to correct for the effects of spillover.
compensationSet
Sample Compensation Data Set
applyControlGates
Apply control gates to a flowPlate
flowPlate-class
The flowPlate class.
plateSet
Get the flowSet from a flowPlate object
densityplot
One-dimensional density plots for flowPlates
gutterPlot
gutterPlot
fpbind
Merge multiple flowPlates into a single virtual flowPlate
Subset
Subset
plotPlate
plotPlate
prepanel.xyplot.flowPlate
Lattice-flowViz style panel function for flowPlate xyplot.
%on%
Methods for Function %on% in Package `plateCore'
pbmcPlate
pbmcPlate Data Set
prepanel.densityplot.flowPlate
Lattice-flowViz style panel function for flowPlate densityplot.
plateCore-package
plateCore: A Bioconductor package for high throughput analysis of flow cytometry data
panel.densityplot.flowPlate
Lattice-flowViz style panel function for flowPlate densityplot.
fixAutoFl
Correct for the effects of cell size (FSC) on autofluorescence
flowPlate
Create a flowPlate
panel.xyplot.flowPlate
Lattice-flowViz style panel function for flowPlate xyplot.
mfiPlot
mfiPlot
setControlGates
Create control gates for a flowPlate
summaryStats
Compute summary statistics on a flowPlate