plethy (version 1.10.0)

plethy-package: R framework for exploration and analysis of respirometry data

Description

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Details

Package:

plethy

Version:

0.99.4

Date:

2013-4-26

Imports:

Streamer, DBI, RSQLite, methods, IRanges, reshape2, batch

Depends:

R (>= 3.0.0)

Suggests:

RUnit, BiocGenerics

License:

GPL-3

biocViews:

DataImport, biocViews, Infastructure, DataRepresentation,TimeCourse

Collate:

BuxcoDB.R RetList.R buxco_db_v2.R dep_parser.R utilities.R

Packaged:

2013-08-01 21:02:18 UTC; bottomly

Built:

R 3.0.1; ; 2013-08-01 21:02:29 UTC; unix

Index:

BuxcoDB-class           Class '"BuxcoDB"'
dbImport                Import data into a BuxcoDB database
parse.buxco             Functions for parsing Buxco respirometry data
plethy-package          R framework for exploration and analysis of
                        respirometry data
buxco.sample.data.path  Path to a sample Buxco output file
sample.db.path          Path to a sample BuxcoDB database

Further information is available in the following vignettes:

plethy

plethy (source, pdf)

References

www.buxco.com

Examples

tmp_db <- tempfile()

bux.db <- parse.buxco(file.name=buxco.sample.data.path(), db.name = tmp_db)

head(retrieveData(bux.db))

bux.db <- makeBuxcoDB(tmp_db)

samples(bux.db)
variables(bux.db)