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plsRcox (version 0.2.0)

Partial least squares Regression for Cox models and related techniques

Description

This packages provides Partial least squares Regression and various techniques for fitting Cox models in high dimensionnal settings. It allows for Kfold crossvalidation of such models using various criteria, missing data in the eXplanatory variables. Bootstrap confidence intervals constructions are also available.

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Version

Install

install.packages('plsRcox')

Monthly Downloads

1,372

Version

0.2.0

License

GPL-3

Maintainer

Frederic Bertrand

Last Published

January 15th, 2011

Functions in plsRcox (0.2.0)

coxDKplsDR

Fitting a Direct Kernel PLS model on the (Deviance) Residuals
cox_pls2_supp_vals_KM_micro

Demo dataset
cox_pls2_supp_vals_NNE

Demo dataset
cox_pls2_supp_vals_NNE_micro

Demo dataset
cox_plsDR2_supp_vals_KM_micro

Demo dataset
larsDR_coxph

Fitting a LASSO/LARS model on the (Deviance) Residuals
coxpls

Fitting a Cox-Model on PLSR components
cox_pls2_supp_vals_KM

Demo dataset
cox_plsDR2_supp_vals_NNE_micro

Demo dataset
lars_supp_vals_NNE_micro

Demo dataset
cox_glcoxph_supp_vals_KM

Demo dataset
coxplsDR2

Fitting a PLSR model on the (Deviance) Residuals
cox_glcoxph_supp_vals_KM_micro

Demo dataset
cox_plsDR2_supp_vals_KM

Demo dataset
DR_coxph

(Deviance) Residuals Computation
lars_supp_vals_KM_micro

Demo dataset
cox_glcoxph_supp_vals_NNE_micro

Demo dataset
plsRcox-package

Partial least squares Regression for Cox models and related techniques
micro.censure

Microsat features and survival times
cox_plsDR2_supp_vals_NNE

Demo dataset
cox_glcoxph_supp_vals_NNE

Demo dataset
Xmicro.censure_compl_imp

Imputed Microsat features
lars_supp_vals_KM

Demo dataset
coxpls2

Fitting a Cox-Model on PLSR components
lars_supp_vals_NNE

Demo dataset
coxplsDR

Fitting a PLSR model on the (Deviance) Residuals