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plsRcox (version 1.7.0)

Partial least squares Regression for Cox models and related techniques

Description

This packages provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings.

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Version

Install

install.packages('plsRcox')

Monthly Downloads

1,372

Version

1.7.0

License

GPL-3

Maintainer

Frederic Bertrand

Last Published

July 19th, 2014

Functions in plsRcox (1.7.0)

coxpls

Fitting a Cox-Model on PLSR components
coxpls3DR

Fitting a PLSR model on the (Deviance) Residuals
coxDKsplsDR

Fitting a Direct Kernel sPLSR model on the (Deviance) Residuals
coxDKplsDR

Fitting a Direct Kernel PLS model on the (Deviance) Residuals
summary.plsRcoxmodel

Summary method for plsRcox models
print.plsRcoxmodel

Print method for plsRcox models
coxpls2DR

Fitting a PLSR model on the (Deviance) Residuals
DR_coxph

(Deviance) Residuals Computation
Xmicro.censure_compl_imp

Imputed Microsat features
cv.coxDKplsDR

Cross-validating a DKplsDR-Model
cv.autoplsRcox

Cross-validating an autoplsRcox-Model
cv.coxsplsDR

Cross-validating a splsDR-Model
cv.larsDR

Cross-validating a larsDR-Model
coxpls3

Fitting a Cox-Model on PLSR components
coxDKpls2DR

Fitting a Direct Kernel PLS model on the (Deviance) Residuals
larsDR_coxph

Fitting a LASSO/LARS model on the (Deviance) Residuals
internal-plsRcox

Internal plsRcox functions
cv.coxpls

Cross-validating a Cox-Model fitted on PLSR components
cv.coxplsDR

Cross-validating a plsDR-Model
plsRcox

Partial least squares Regression generalized linear models
coxsplsDR

Fitting a sPLSR model on the (Deviance) Residuals
micro.censure

Microsat features and survival times
coxplsDR

Fitting a PLSR model on the (Deviance) Residuals
predict.plsRcoxmodel

Print method for plsRcox models
cv.coxDKsplsDR

Cross-validating a DKsplsDR-Model
coxpls2

Fitting a Cox-Model on PLSR components
cv.plsRcox

Cross-validating a plsRcox-Model
print.summary.plsRcoxmodel

Print method for summaries of plsRcox models
DKplsRcox

Partial least squares Regression generalized linear models