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plw (version 1.32.0)

Probe level Locally moderated Weighted t-tests.

Description

Probe level Locally moderated Weighted median-t (PLW) and Locally Moderated Weighted-t (LMW).

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Version

Version

1.32.0

License

GPL-2

Maintainer

Magnus Astrand

Last Published

February 15th, 2017

Functions in plw (1.32.0)

plw-package

plw
scaleParameterPlot

Scale parameter plotted against mean intensity
estimateMVbeta

Zero mean multivariate t-dist. with covariate dependent scale.
estimateSigmaMV

Fit zero mean multivariate t-distribution
topRankSummary

Return or plots analysis result for top ranking or selected probe sets
varHistPlot

Variance histogram and density
AffySpikeU95Subset

Spike-in data
plw

Probe level Locally moderated Weighted median-t.
HowToPLW

View HowToPLW
statByIndex

Computes statistics by index or by row
estimateSigmaMVbeta

Zero mean multivariate t-dist. with covariate dependent scale.
logitT

logit-t and t-test by row
lmw

Locally Moderated Weighted-t.
getKnots

Spline-knots for plw and lmw
estimateSigma

Fit zero mean multivariate t-distribution, known df