find_fmeta_cnames

Find column names in f_meta for each object. May return in two objects
sharing the same column name.

internal

Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.

Lisa Bramer

pmartR

Panomics Marketplace - Quality Control and Statistical Analysis
for Panomics Data

Kelly Stratton

Daniel Claborne

Evan Glasscock

Rachel Richardson

David Degnan

Evan Martin

find_fmeta_cnames function

<dl><dt>res</dt>
<dd>The output of <code>fmeta_matches</code>, A list, the i-th element of
which contains a character vector of column name matches in f_meta for the
i-th omicsData object.</dd></dl>

Arguments

Find column names in f_meta for each object.  May return in two objects
sharing the same column name. — find_fmeta_cnames

<dl>

<dt>res</dt>
<dd>The output of <code>fmeta_matches</code>, A list, the i-th element of
which contains a character vector of column name matches in f_meta for the
i-th omicsData object.</dd>

</dl>

find_fmeta_cnames: Find column names in f_meta for each object. May return in two objects sharing the same column name.

Description

Usage

Value

Arguments