make_volcano_plot_df

A function internal to pmartR:::plot.statRes which creates the
dataframe necessary to construct volcano plots and heatmaps.

internal

Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.

Lisa Bramer

pmartR

Panomics Marketplace - Quality Control and Statistical Analysis
for Panomics Data

Kelly Stratton

Daniel Claborne

Evan Glasscock

Rachel Richardson

David Degnan

Evan Martin

make_volcano_plot_df function

<dl><dt>x</dt>
<dd>`statRes` object to be plotted, usually the result of `imd_anova`</dd></dl>

Arguments

Create a plotting dataframe for volcano plots and heatmaps — make_volcano_plot_df

<dl>

<dt>x</dt>
<dd>`statRes` object to be plotted, usually the result of `imd_anova`</dd>

</dl>

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make_volcano_plot_df: Create a plotting dataframe for volcano plots and heatmaps

Description

Usage

Value

Arguments