pmartR (version 2.4.6)

plot.SPANSRes: Plot SPANSRes Object

Description

For plotting an S3 object of type 'SPANSRes'

Usage

# S3 method for SPANSRes
plot(
  x,
  interactive = FALSE,
  x_lab = NULL,
  y_lab = NULL,
  x_lab_size = 11,
  y_lab_size = 11,
  x_lab_angle = NULL,
  title_lab = NULL,
  title_lab_size = 14,
  legend_lab = NULL,
  legend_position = "right",
  color_low = NULL,
  color_high = NULL,
  bw_theme = TRUE,
  ...
)

Value

ggplot2 plot object if interactive is FALSE, or plotly plot object if interactive is TRUE

Arguments

x

an object of the class 'SPANSRes', created by spans_procedure

interactive

logical value. If TRUE produces an interactive plot.

x_lab

character string specifying the x-axis label.

y_lab

character string specifying the y-axis label.

x_lab_size

integer value indicating the font size for the x-axis. The default is 11.

y_lab_size

integer value indicating the font size for the y-axis. The default is 11.

x_lab_angle

integer value indicating the angle of x-axis labels. The default is NULL.

title_lab

character string specifying the plot title

title_lab_size

integer value indicating the font size of the plot title. The default is 14.

legend_lab

character string specifying the legend title

legend_position

character string specifying the position of the legend. Can be one of "right", "left", "top", "bottom", or "none". The default is "none".

color_low

character string specifying the color of the gradient for low values.

color_high

character string specifying the color of the gradient for high values

bw_theme

logical value. If TRUE uses the ggplot2 black and white theme.

...

further arguments passed to or from other methods.

Examples

if (FALSE) { # requireNamespace("pmartRdata", quietly = TRUE)
# \donttest{
library(pmartRdata)
data(pep_object)
mypep <- edata_transform(omicsData = pep_object, data_scale = "log2")
mypep <- group_designation(omicsData = mypep, main_effects = "Phenotype")
myspans <- spans_procedure(omicsData = mypep)
plot(myspans)
# }
}