plot.isobaricnormRes: Plot isobaricnormRes object

Description

Creates box plots for an S3 object of type 'isobaricnormRes'

Usage

# S3 method for isobaricnormRes
plot(
  x,
  order = FALSE,
  interactive = FALSE,
  x_lab = NULL,
  y_lab = NULL,
  x_lab_size = 11,
  y_lab_size = 11,
  x_lab_angle = NULL,
  title_lab = NULL,
  title_lab_size = 14,
  legend_lab = NULL,
  legend_position = "none",
  bw_theme = TRUE,
  palette = NULL,
  ...
)

Value

ggplot2 plot object if interactive is FALSE, or plotly plot object if interactive is TRUE

Arguments

x: an object of type isobaricnormRes, created by normalize_isobaric with apply_norm = FALSE
order: logical value. If TRUE the samples will be ordered by the column of f_data containing the experiment/plate information.
interactive: logical value. If TRUE produces an interactive plot.
x_lab: character string specifying the x-axis label
y_lab: character string specifying the y-axis label
x_lab_size: integer value indicating the font size for the x-axis. The default is 11.
y_lab_size: integer value indicating the font size for the y-axis. The default is 11.
x_lab_angle: integer value indicating the angle of x-axis labels.
title_lab: character string specifying the plot title.
title_lab_size: integer value indicating the font size of the plot title. The default is 14.
legend_lab: character string specifying the legend title.
legend_position: character string specifying the position of the legend. Can be one of "right", "left", "top", "bottom", or "none". The default is "none".
bw_theme: logical value. If TRUE uses the ggplot2 black and white theme.
palette: character string indicating the name of the RColorBrewer palette to use. For a list of available options see the details section in RColorBrewer.
...: further arguments passed to or from other methods.