prep_flags

Changes the flags columns from a statRes object into a format that the
statRes plot funcitons can handle. pmartR is an unruly beast that cannot be
tamed!!

Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.

Lisa Bramer

pmartR

Panomics Marketplace - Quality Control and Statistical Analysis
for Panomics Data

Kelly Stratton

Daniel Claborne

Evan Glasscock

Rachel Richardson

David Degnan

Evan Martin

prep_flags function

<dl><dt>x</dt>
<dd>A statRes object.</dd>
<dt>test</dt>
<dd>character string indicating the type of test run.</dd></dl>

Arguments

Extract flag columns from a statRes object — prep_flags

<dl>

<dt>x</dt>
<dd>A statRes object.</dd>


<dt>test</dt>
<dd>character string indicating the type of test run.</dd>

</dl>

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prep_flags: Extract flag columns from a statRes object

Description

Usage

Value

Arguments

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Description

Usage

Value

Arguments

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RADAR: AI Edition