report_dataRes

This function takes in an object of class 'dataRes' and returns a data frame
displaying a combination of metrics. The six summarizing metrics include,
mean, standard deviation, median, percent observed, minimum, and maximum.

Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.

Lisa Bramer

pmartR

Panomics Marketplace - Quality Control and Statistical Analysis
for Panomics Data

Kelly Stratton

Daniel Claborne

Evan Glasscock

Rachel Richardson

David Degnan

Evan Martin

report_dataRes function

<dl><dt>dataRes</dt>
<dd>an object of the class 'dataRes', created by
<code>edata_summary</code>.</dd>
<dt>minmax</dt>
<dd>logical specifying whether or not to include minimum and
maximum data in the returned data frame. Defaults to FALSE.</dd>
<dt>digits</dt>
<dd>integer indicating the number of decimal places to round</dd></dl>

Arguments

Creates a data frame displaying multiple metrics — report_dataRes

<dl>

<dt>dataRes</dt>
<dd>an object of the class 'dataRes', created by
<code>edata_summary</code>.</dd>


<dt>minmax</dt>
<dd>logical specifying whether or not to include minimum and
maximum data in the returned data frame. Defaults to FALSE.</dd>


<dt>digits</dt>
<dd>integer indicating the number of decimal places to round</dd>

</dl>

report_dataRes: Creates a data frame displaying multiple metrics

Description

Usage

Value

Arguments

Details