set_data_info

Create a set function that will return the value for each attribute. For
example, set_data_info will perform all of the calculations to fill in the
data_info attribute. These functions will be called in the as.xxx functions
to create an xxxData object but can be used individually to update any one of
the attributes at a later time.
Sets/updates the values in the data_info attribute

internal

Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.

Lisa Bramer

pmartR

Panomics Marketplace - Quality Control and Statistical Analysis
for Panomics Data

Kelly Stratton

Daniel Claborne

Evan Glasscock

Rachel Richardson

David Degnan

Evan Martin

set_data_info function

<dl><dt>e_data, edata_cname, data_scale_orig, data_scale, data_types, norm_info, is_normalized, batch_info, is_bc</dt>
<dd>See the <code>as.omicsData</code> functions, e.g. <code>as.lipidData</code></dd></dl>

Arguments

Functions to set omicsData attributes ---------------------------------------- — set_data_info

<dl>

<dt>e_data, edata_cname, data_scale_orig, data_scale, data_types, norm_info, is_normalized, batch_info, is_bc</dt>
<dd>See the <code>as.omicsData</code> functions, e.g. <code>as.lipidData</code></dd>

</dl>

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set_data_info: Functions to set omicsData attributes ----------------------------------------

Description

Usage

Value

Arguments