pmartR (version 2.4.6)

summary-omicsData: Produce a basic summary of a pmartR omicsData S3 Object

Description

This function will provide basic summary statistics for omicsData objects from the pmartR package.

Usage

# S3 method for pepData
summary(object, ...)
# S3 method for proData
summary(object, ...)
# S3 method for lipidData
summary(object, ...)
# S3 method for metabData
summary(object, ...)
# S3 method for nmrData
summary(object, ...)
# S3 method for seqData
summary(object, ...)

Value

a summary table for the pmartR omicsData object. If assigned to a variable, the elements of the summary table are saved in a list format.

Arguments

object

an object of the class 'lipidData', 'metabData', 'pepData', 'proData', nmrData', or 'seqData' usually created by as.lipidData, as.metabData, as.pepData, as.proData, as.nmrData, or as.seqData, respectively.

...

further arguments passed to or from other methods.

Author

Lisa Bramer, Kelly Stratton, Thomas Johansen

Examples

if (FALSE) { # requireNamespace("pmartRdata", quietly = TRUE)
library(pmartRdata)
pep_summary <- summary(pep_object)
iso_summary <- summary(isobaric_object)
pro_summary <- summary(pro_object)
metab_summary <- summary(metab_object)
lipid_summary <- summary(lipid_neg_object)
nmr_summary <- summary(nmr_identified_object)
rnaseq_summary <- summary(rnaseq_object)
}