summary-pmartR-results

summary.normRes

summary.SPANSRes

summary.dimRes

summary.corRes

Provide basic summaries for results objects from the pmartR package.

Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) <doi:10.1074/mcp.M113.030932>. Webb-Robertson et al. (2011) <doi:10.1002/pmic.201100078>. Matzke et al. (2011) <doi:10.1093/bioinformatics/btr479>. Matzke et al. (2013) <doi:10.1002/pmic.201200269>. Polpitiya et al. (2008) <doi:10.1093/bioinformatics/btn217>. Webb-Robertson et al. (2010) <doi:10.1021/pr1005247>.

Lisa Bramer

pmartR

Panomics Marketplace - Quality Control and Statistical Analysis
for Panomics Data

Kelly Stratton

Daniel Claborne

Evan Glasscock

Rachel Richardson

David Degnan

Evan Martin

summary-pmartR-results function

<dl><dt>object</dt>
<dd>object of class corRes</dd>
<dt>...</dt>
<dd>further arguments passed to or from other methods.</dd></dl>

Arguments

Lisa Bramer, Kelly Stratton, Thomas Johansen

Author

Summary of pmartR Analysis Functions — summary-pmartR-results

<dl>

<dt>object</dt>
<dd>object of class corRes</dd>


<dt>...</dt>
<dd>further arguments passed to or from other methods.</dd>

</dl>

summary-pmartR-results: Summary of pmartR Analysis Functions

Description

Usage

Value

Arguments

Author