pmartR (version 2.4.6)

summary.totalCountFilt: Total Count Filter Summary

Description

Provide summary of a totalCountFilt S3 object

Usage

# S3 method for totalCountFilt
summary(object, min_count = NULL, ...)

Value

a summary of the Total Count values, number of zero values, and non-zero values. If a min_count is provided the biomolecules that would be filtered at this threshold are reported.

Arguments

object

S3 object of class 'totalCountFilt' created by total_count_filter.

min_count

numeric value greater than 1 and less than the value given by filter_object$Total_Count. Values below min_count are filtered out. Default value is NULL.

...

further arguments passed to or from other methods

Author

Rachel Richardson

See Also

total_count_filter

Examples

if (FALSE) { # requireNamespace("pmartRdata", quietly = TRUE)
# \donttest{
library(pmartRdata)
myfilt <- total_count_filter(omicsData = rnaseq_object)
summary(myfilt, min_count = 15)
# }
}