pmc (version 0.0-8)

treepower: function to create the power curve for a tree

Description

compares BM against OU of increasing value of alpha

Usage

treepower(tree, nboot = 100, cpu = 2, threshold = 0.95,
    alpha = seq(0.001, 30, length = 100),
    method = "hansen")

Arguments

tree

an ouchtree class phylogeny

nboot

number of bootstraps to use in power simulation

cpu

number of cpu's available

threshold

to use for the power calculation

alpha

a sequence of alpha values to try

method

currently ignored as only comparisons to OU through hansen are allowed

Value

• a power object, see examples in the vignette

Details

function can take a while to run all comparisons.