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pmclust (version 0.1-4)

Parallel Model-Based Clustering

Description

The pmclust aims to utilize model-based clustering (unsupervised) for high dimensional and ultra large data, especially in a distributed manner. The package employs Rmpi to perform a expectation-gathering-maximization (EGM) algorithm for finite mixture Gaussian models. The unstructured dispersion matrices are assumed in the Gaussian models. The implementation is default in the single program multiple data (SPMD) programming model. The code can be executed through Rmpi and independent to most MPI applications. See the High Performance Statistical Computing (HPSC) website for more information, documents and examples.

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Install

install.packages('pmclust')

Monthly Downloads

97

Version

0.1-4

License

GPL (>= 2)

Maintainer

Wei-Chen Chen

Last Published

March 25th, 2013

Functions in pmclust (0.1-4)

Set of CONTROL

A Set of Controls in Model-Based Clustering.
One E-Step

Compute One E-step and Log Likelihood Based on Current Parameters
Read Me First

Read Me First Function
EM-like algorithms

EM-like Steps for SPMD
assign.N.sample

Obtain a Set of Random Samples for X.spmd
as.dmat

Convert X.spmd to X.dmat
mb.print

Print Results of Model-Based Clustering
get.N.CLASS

Obtain Total Elements for Every Clusters
One Step of EM algorithm

One EM Step for SPMD
Update Class of EM or Kmenas Results

Update CLASS.spmd Based on the Final Iteration
Set Global Variables

Set Global Variables According to the global matrix X.spmd or X.dmat
generate.basic

Generate Examples for Testing
pmclust-package

Parallel Model-Based Clustering
generate.MixSim

Generate MixSim Examples for Testing
One M-Step

Compute One M-Step Based on Current Posterior Probabilities
indep.logL

Independent Function for Log Likelihood
Initialization

Initialization for EM-like Algorithms
Set of PARAM

A Set of Parameters in Model-Based Clustering.