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pmclust (version 0.1-6)

Parallel Model-Based Clustering

Description

The pmclust aims to utilize model-based clustering (unsupervised) for high dimensional and ultra large data, especially in a distributed manner. The package employs Rmpi to perform a expectation-gathering-maximization (EGM) algorithm for finite mixture Gaussian models. The unstructured dispersion matrices are assumed in the Gaussian models. The implementation is default in the single program multiple data (SPMD) programming model. The code can be executed through Rmpi and independent to most MPI applications. See the High Performance Statistical Computing (HPSC) website for more information, documents and examples.

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Version

Install

install.packages('pmclust')

Monthly Downloads

97

Version

0.1-6

License

GPL (>= 2)

Maintainer

Wei-Chen Chen

Last Published

February 3rd, 2014

Functions in pmclust (0.1-6)

Set Global Variables

Set Global Variables According to the global matrix X.gbd (X.spmd) or X.dmat
mb.print

Print Results of Model-Based Clustering
print.object

Functions for Printing or Summarizing Objects According to Classes
pmclust and pkmeans

Parallel Model-Based Clustering and Parallel K-means Algorithm
One M-Step

Compute One M-Step Based on Current Posterior Probabilities
assign.N.sample

Obtain a Set of Random Samples for X.spmd
One Step of EM algorithm

One EM Step for GBD
Update Class of EM or Kmenas Results

Update CLASS.spmd Based on the Final Iteration
pmclust-package

Parallel Model-Based Clustering
Independent logL

Independent Function for Log Likelihood
generate.basic

Generate Examples for Testing
Set of CONTROL

A Set of Controls in Model-Based Clustering.
get.N.CLASS

Obtain Total Elements for Every Clusters
EM-like algorithms

EM-like Steps for GBD
One E-Step

Compute One E-step and Log Likelihood Based on Current Parameters
Set of PARAM

A Set of Parameters in Model-Based Clustering.
Initialization

Initialization for EM-like Algorithms
Read Me First

Read Me First Function
generate.MixSim

Generate MixSim Examples for Testing
as functions

Convert between X.gbd (X.spmd) and X.dmat