sample_store

Create a new list for storage samples in the pmwgs object

internal

Provides an R implementation of the Particle Metropolis within
Gibbs sampler for model parameter, covariance matrix and random effect
estimation. A more general implementation of the sampler based on the paper
by Gunawan, D., Hawkins, G. E., Tran, M. N., Kohn, R., & Brown, S. D.
(2020) <doi:10.1016/j.jmp.2020.102368>. An HTML tutorial document describing
the package is available at
<https://university-of-newcastle-research.github.io/samplerDoc/> and
includes several detailed examples, some background and troubleshooting
steps.

Gavin Cooper

pmwg

Particle Metropolis Within Gibbs

Reilly Innes

Caroline Kuhne

Jon-Paul Cavallaro

David Gunawan

Guy Hawkins

Scott Brown

Niek Stevenson

sample_store function

<dl><dt>par_names</dt>
<dd>The names of each parameter as a character vector</dd>
<dt>subject_ids</dt>
<dd>The unique ID of each subjects as a character vector</dd>
<dt>iters</dt>
<dd>The number of iterations to be pre-allocated</dd>
<dt>stage</dt>
<dd>The stage for which the samples will be created. Should be one
of <code>c("init", "burn", "adapt", "sample")</code></dd></dl>

Arguments

Create a new list for storage samples in the pmwgs object — sample_store

<dl>

<dt>par_names</dt>
<dd>The names of each parameter as a character vector</dd>


<dt>subject_ids</dt>
<dd>The unique ID of each subjects as a character vector</dd>


<dt>iters</dt>
<dd>The number of iterations to be pre-allocated</dd>


<dt>stage</dt>
<dd>The stage for which the samples will be created. Should be one
of <code>c("init", "burn", "adapt", "sample")</code></dd>

</dl>

Create a new list for storage samples in the pmwgs object

sample_store: Create a new list for storage samples in the pmwgs object

Description

Usage

Value

Arguments