pnea (version 1.2.4)

summary.pnea: Summary method of pnea

Description

summary method for class "pnea".

Usage

"summary"(object, ...)

Arguments

object

An object of class "pnea"

...

Further arguments passed to or from other methods

Value

The summary.pnea function returns the following values:

• the number of tests computed;
• the number of enrichments at 1% and 5% level;
• the p-value of the Kolmogorov-Smirnov test to check if the distribution of p-values is uniform.

See Also

pnea, plot.pnea, summary.pnea

Examples

## Not run: 
# data(yeast)
# esr = list('ESR 1' = yeast$esr1, 'ESR 2' = yeast$esr2)
# test = pnea(alist = esr, blist = yeast$goslimproc, network = yeast$yeastnet,
#             nettype = 'undirected', nodes = yeast$ynetgenes, alpha = 0.01)
# 
# test1 = test[1:99,]
# summary(test1)
# 
# test2 = test[100:198,]
# summary(test2)
# ## End(Not run)