thylacine_bounty_record

A dataset containing the historical record of the Thylacine bounty numbers submitted
across the Tasmanian study region, and for each of the nine Interim Bioregionalisation
of Australia (IBRA) bioregions for Thylacine example vignette.

A framework of interoperable R6 classes (Chang, 2020, <https://CRAN.R-project.org/package=R6>) for building ensembles of viable models via the pattern-oriented modeling (POM) approach (Grimm et al.,2005, <doi:10.1126/science.1116681>). The package includes classes for encapsulating and generating model parameters, and managing the POM workflow. The workflow includes: model setup; generating model parameters via Latin hyper-cube sampling (Iman & Conover, 1980, <doi:10.1080/03610928008827996>); running multiple sampled model simulations; collating summary results; and validating and selecting an ensemble of models that best match known patterns. By default, model validation and selection utilizes an approximate Bayesian computation (ABC) approach (Beaumont et al., 2002, <doi:10.1093/genetics/162.4.2025>), although alternative user-defined functionality could be employed. The package includes a spatially explicit demographic population model simulation engine, which incorporates default functionality for density dependence, correlated environmental stochasticity, stage-based transitions, and distance-based dispersal. The user may customize the simulator by defining functionality for translocations, harvesting, mortality, and other processes, as well as defining the sequence order for the simulator processes. The framework could also be adapted for use with other model simulators by utilizing its extendable (inheritable) base classes.

July Pilowsky

poems

Pattern-Oriented Ensemble Modeling System

Sean Haythorne

Damien Fordham

Stuart Brown

Jessie Buettel

Barry Brook

thylacine_bounty_record function

A data frame with 22 rows and 11 variables:<dl>
<dt>Year</dt>
<dd>Year during bounty period from 1888 to 1909</dd><dt>Total</dt>
<dd>Total Tasmania-wide bounty submitted</dd><dt>FUR</dt>
<dd>Bounty submitted in IBRA bioregion: Furneaux</dd><dt>BEN</dt>
<dd>Bounty submitted in IBRA bioregion: Ben Lomond</dd><dt>TNM</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Northern Midlands</dd><dt>TSE</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian South East</dd><dt>TW</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian West</dd><dt>TNS</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Northern Slopes</dd><dt>TSR</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Southern Ranges</dd><dt>TCH</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Central Highlands</dd><dt>KIN</dt>
<dd>Bounty submitted in IBRA bioregion: King</dd>
</dl>

Format

Thylacine vignette bounty record — thylacine_bounty_record

A data frame with 22 rows and 11 variables:<dl>
<dt>Year</dt>
<dd>Year during bounty period from 1888 to 1909</dd>

<dt>Total</dt>
<dd>Total Tasmania-wide bounty submitted</dd>

<dt>FUR</dt>
<dd>Bounty submitted in IBRA bioregion: Furneaux</dd>

<dt>BEN</dt>
<dd>Bounty submitted in IBRA bioregion: Ben Lomond</dd>

<dt>TNM</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Northern Midlands</dd>

<dt>TSE</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian South East</dd>

<dt>TW</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian West</dd>

<dt>TNS</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Northern Slopes</dd>

<dt>TSR</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Southern Ranges</dd>

<dt>TCH</dt>
<dd>Bounty submitted in IBRA bioregion: Tasmanian Central Highlands</dd>

<dt>KIN</dt>
<dd>Bounty submitted in IBRA bioregion: King</dd>


</dl>

thylacine_bounty_record: Thylacine vignette bounty record

Description

Arguments

Format

Examples