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polyRAD (version 1.0)

Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

Description

Read depth data from genotyping-by-sequencing (GBS) or restriction site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian probability estimates of genotypes in polyploids or diploids. The genotype probabilities, or genotypes sampled from those probabilties, can then be exported for downstream analysis. 'polyRAD' is described by Clark et al. (2018) .

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install.packages('polyRAD')

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361

Version

1.0

License

GPL (>= 2)

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Last Published

November 19th, 2018

Functions in polyRAD (1.0)