loessfit3


Loess model for log counts measuring transcript expression as
  a function of the transcript's GC content. The model was created using
  sample NA12776 in the <code>Ballgown</code> obtained at
  <a href="http://files.figshare.com/1625419/fpkm.rda">http://files.figshare.com/1625419/fpkm.rda</a>


This package can be used to simulate RNA-seq reads from
differential expression experiments with replicates. The reads can then be
aligned and used to perform comparisons of methods for differential
expression.

Alyssa Frazee

polyester

Simulate RNA-seq reads

loessfit3 function

Format

Constructed using the code available at
  <a href="https://github.com/alyssafrazee/polyester/blob/master/gc_bias.R">https://github.com/alyssafrazee/polyester/blob/master/gc_bias.R</a>

Source


Loess model for log counts measuring transcript expression as
  a function of the transcript's GC content. The model was created using
  sample NA12776 in the <code>Ballgown</code> obtained at
  <a href = 'http://files.figshare.com/1625419/fpkm.rda'>http://files.figshare.com/1625419/fpkm.rda</a>


Constructed using the code available at
  <a href = 'https://github.com/alyssafrazee/polyester/blob/master/gc_bias.R'>https://github.com/alyssafrazee/polyester/blob/master/gc_bias.R</a>

loessfit3: Empirical GC bias model, NA12776

Description

Arguments

Format

Source

References