count_transcripts

character, path to a file in FASTA or GTF format

TRUE if <code>f</code> is a fasta file; FALSE if <code>f</code> is a GTF
file

fasta

if <code>f</code> is a GTF file, how are transcripts identified
in the attributes field (9th column) of the file? Default
<code>transcript_id</code>.

identifier

if <code>f</code> is a GTF file, how are attributes separated in
the attributes field (9th column) of the file? Default "; ".

attrsep


determine how many transcripts are annotated in a FASTA or GTF file


This package can be used to simulate RNA-seq reads from
differential expression experiments with replicates. The reads
can then be aligned and used to perform comparisons of methods
for differential expression.

Alyssa Frazee

polyester

Simulate RNA-seq reads

count_transcripts function

determine how many transcripts are annotated in a FASTA or GTF file

count_transcripts: determine how many transcripts are annotated in a FASTA or GTF file

Description

Usage

Arguments

Value

Examples