gtf_dataframe


In the data frame <code>gtf_dataframe</code>, each
  row corresponds to an exon / coding sequence / start codon / stop codon,
  and the columns correspond to standard GTF columns denoting annotated
  genomic features. See
  <a href="http://www.ensembl.org/info/website/upload/gff.html">http://www.ensembl.org/info/website/upload/gff.html</a>.


This package can be used to simulate RNA-seq reads from
differential expression experiments with replicates. The reads
can then be aligned and used to perform comparisons of methods
for differential expression.

Alyssa Frazee

polyester

Simulate RNA-seq reads

gtf_dataframe function

Format

Illumina iGenomes, hg19, 6 March 2013 version:
<a href="http://ccb.jhu.edu/software/tophat/igenomes.shtml">http://ccb.jhu.edu/software/tophat/igenomes.shtml</a>.

Source

In the data frame <code>gtf_dataframe</code>, each
  row corresponds to an exon / coding sequence / start codon / stop codon,
  and the columns correspond to standard GTF columns denoting annotated
  genomic features. See
  <url>http://www.ensembl.org/info/website/upload/gff.html</url>.

gtf_dataframe: data frame (in gtf-inspired format) for chromosome 22, hg19

Description

Arguments

Format

Source