plot_SNlinks

linkage_df

A <code>data.frame</code> as a result of <code><a rd-options="" href="/link/bridgeHomologues?package=polymapR&version=1.0.17" data-mini-rdoc="polymapR::bridgeHomologues">bridgeHomologues</a></code>

LG_hom_stack

LG_number

Homologue to be compared against h1

ymax

Make a plot with recombination frequency versus LOD score.

Creation of linkage maps in polyploid species from marker dosage
scores of an F1 cross from two heterozygous parents. Currently works for autotriploid, autotetraploid and autohexaploid species,
as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>.

Peter Bourke

polymapR

Linkage Analysis in Outcrossing Polyploids

Geert van Geest

plot_SNlinks function

A <code>data.frame</code> as a result of <code><a rd-options='' href='bridgeHomologues'>bridgeHomologues</a></code>

plot_SNlinks: Plot links between 1.0 markers

Description

Usage

Arguments