SN_SN_P1

SN_SN_P2

SN_SS_P1

SN_SS_P2

SN_DN_P1

SN_DN_P2

SN_SN_P2_triploid

A linkage <code>data.frame</code>.

datasets

Creation of linkage maps in polyploid species from marker dosage
scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species,
as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0,
both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (submitted, 2020).

Peter Bourke

polymapR

Linkage Analysis in Outcrossing Polyploids

Geert van Geest

Roeland Voorrips

Yanlin Liao

SN_SN_P1 function

<ul>
<li>marker_a. First marker in comparison</li>
<li>marker_b. Second marker in comparison</li>
<li>r. recombination frequency</li>
<li>LOD. LOD score</li>
<li>phase. The phase between markers</li>
</ul>An object of class <code>linkage_df</code> (inherits from <code>data.frame</code>) with 19306 rows and 5 columns.
An object of class <code>linkage_df</code> (inherits from <code>data.frame</code>) with 53152 rows and 5 columns.
An object of class <code>linkage_df</code> (inherits from <code>data.frame</code>) with 59494 rows and 5 columns.
An object of class <code>linkage_df</code> (inherits from <code>data.frame</code>) with 19536 rows and 5 columns.
An object of class <code>linkage_df</code> (inherits from <code>data.frame</code>) with 19897 rows and 5 columns.
An object of class <code>data.frame</code> with 6655 rows and 5 columns.

Format

A linkage <code>data.frame</code>. — SN_SN_P1

A linkage <code>data.frame</code>.

SN_SN_P1: A linkage `data.frame`.

Description

Usage

Arguments

Format