ALL_dosages

segregating_data

screened_data

screened_data2

screened_data3

TRI_dosages

A dosage matrix for a random pairing tetraploid with five linkage groups.

datasets

Creation of linkage maps in polyploid species from marker dosage
scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species,
as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0,
both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.

Peter Bourke

polymapR

Linkage Analysis in Outcrossing Polyploids

Geert van Geest

Roeland Voorrips

Yanlin Liao

ALL_dosages function

A matrix
An object of class <code>matrix</code> (inherits from <code>array</code>) with 2873 rows and 209 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1417 rows and 209 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1417 rows and 207 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 1417 rows and 200 columns.
An object of class <code>matrix</code> (inherits from <code>array</code>) with 250 rows and 202 columns.

Format

A dosage matrix for a random pairing tetraploid with five linkage groups. — ALL_dosages

A dosage matrix for a random pairing tetraploid with five linkage groups.

ALL_dosages: A dosage matrix for a random pairing tetraploid with five linkage groups.

Description

Usage

Arguments

Format