P1_homologues

P2_homologues

P2_homologues_triploid

A list of cluster stacks at different LOD scores

datasets

Creation of linkage maps in polyploid species from marker dosage
scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species,
as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0,
both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.

Peter Bourke

polymapR

Linkage Analysis in Outcrossing Polyploids

Geert van Geest

Roeland Voorrips

Yanlin Liao

P1_homologues function

A list with with LOD thresholds as names. The list contains dataframes with the following format:<ul>
<li>marker. markername</li>
<li>pseudohomologue. name of (pseudo)homologue</li>
</ul>An object of class <code>list</code> of length 10.
An object of class <code>list</code> of length 15.

Format

A list of cluster stacks at different LOD scores — P1_homologues

A list with with LOD thresholds as names. The list contains dataframes with the following format:<ul>
<li>marker. markername</li>
<li>pseudohomologue. name of (pseudo)homologue</li>
</ul>

An object of class <code>list</code> of length 10.
An object of class <code>list</code> of length 15.

P1_homologues: A list of cluster stacks at different LOD scores

Description

Usage

Arguments

Format