convert_polyRAD

Convert (probabilistic) genotype calling results from polyRAD to input compatible with polymapR

Creation of linkage maps in polyploid species from marker dosage
scores of an F1 cross from two heterozygous parents. Currently works for outcrossing diploid, autotriploid, autotetraploid and autohexaploid species,
as well as segmental allotetraploids. Methods are described in a manuscript of Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since version 1.1.0,
both discrete and probabilistic genotypes are acceptable input; for more details on the latter see Liao et al. (2021) <doi:10.1007/s00122-021-03834-x>.

Peter Bourke

polymapR

Linkage Analysis in Outcrossing Polyploids

Geert van Geest

Roeland Voorrips

Yanlin Liao

convert_polyRAD function

<dl><dt>RADdata</dt>
<dd>An RADdata (S3 class) object; output of the function PipelineMapping2Parents having followed
the prior steps needed in the polyRAD pipeline. See the polyRAD vignette for details.</dd></dl>

Arguments

Convert (probabilistic) genotype calling results from polyRAD to input compatible with polymapR — convert_polyRAD

<dl>

<dt>RADdata</dt>
<dd>An RADdata (S3 class) object; output of the function PipelineMapping2Parents having followed
the prior steps needed in the polyRAD pipeline. See the polyRAD vignette for details.</dd>

</dl>

convert_polyRAD: Convert (probabilistic) genotype calling results from polyRAD to input compatible with polymapR

Description

Usage

Value

Arguments

Examples