pomp (version 1.4.1.1)

sir: Compartmental epidemiological models

Description

euler.sir is a pomp object encoding a simple seasonal SIR model. Simulation is performed using an Euler multinomial approximation. gillespie.sir has the same model implemented using Gillespie's algorithm. bbs is a nonseasonal SIR model together with data from a 1978 outbreak of influenza in a British boarding school.

Details

This and similar examples are discussed and constructed in tutorials available on the http://kingaa.github.io/pomp{package website}.

The boarding school influenza outbreak is described in Anonymous (1978).

References

Anonymous (1978). Influenza in a boarding school. British Medical Journal 1:587

See Also

pomp and the tutorials on the http://kingaa.github.io/pomp{package website}.

Examples

pompExample(euler.sir)
plot(euler.sir)
plot(simulate(euler.sir,seed=20348585))
coef(euler.sir)

pompExample(gillespie.sir)
plot(gillespie.sir)
plot(simulate(gillespie.sir,seed=20348585))
coef(gillespie.sir)

pompExample(bbs)
plot(bbs)
coef(bbs)