D.statPool

This functions calculates 3 different D-statistic values from pooled
sequenced data, using the allelic frequencies of the minor allele.

internal

Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

João Carvalho

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Vítor Sousa

D.statPool function

<dl><dt>pop_pi</dt>
<dd>is a matrix of allele frequencies. Each row of that matrix
should correspond to a different population and each column to a different
SNP.</dd></dl>

Arguments

Perform D-statistics analysis — D.statPool

<dl>

<dt>pop_pi</dt>
<dd>is a matrix of allele frequencies. Each row of that matrix
should correspond to a different population and each column to a different
SNP.</dd>

</dl>

D.statPool: Perform D-statistics analysis

Description

Usage

Value

Arguments

Details